Protein Bagels With Whole Wheat Flour

Highlighted under: Easy Healthy Meals Ideas

I absolutely love baking, and these Protein Bagels With Whole Wheat Flour have become one of my favorite go-to recipes. They are incredibly easy to make and pack a punch in protein, giving me a great boost to start my day. Each bite is chewy, satisfying, and perfect for toasting. I often enjoy them with a smear of cream cheese or avocado for added flavor. Plus, they store well in the freezer, making it convenient to have fresh bagels whenever I want. Trust me, once you try these bagels, you won’t want store-bought again!

Isolde Bennett

Created by

Isolde Bennett

Last updated on 2026-02-01T18:41:36.931Z

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When I first experimented with making bagels, I was skeptical about whether I could get the texture just right. Whole wheat flour can often lead to a denser bagel, but this recipe turned out perfectly chewy and deliciously satisfying. The addition of protein powder not only enhances the nutrition but also keeps me full longer, which is a win in my book!

To ensure the best results, I recommend letting the dough rest for a few minutes before shaping the bagels. This allows the gluten to relax and makes it easier to form them into that classic bagel shape. Plus, boiling the bagels before baking gives them that signature chewy crust that is simply irresistible!

Why You Will Love These Bagels

  • Packed with protein for a nutritious start to your day
  • Chewy texture reminiscent of bakery-style bagels
  • Whole wheat flour provides extra fiber and nutrients

The Role of Whole Wheat Flour

Using whole wheat flour not only enhances the nutritional profile of these bagels but also contributes to their unique flavor. Whole wheat flour adds a nutty taste and a heartiness that white flour lacks, making every bite more satisfying. Additionally, the extra fiber found in whole wheat is great for digestion and helps keep you feeling full longer. This is especially beneficial if you have an active morning ahead.

When incorporating whole wheat flour, it's essential to ensure that you knead the dough adequately. Since whole wheat flour absorbs more moisture than all-purpose flour, the dough may seem a bit denser. Knead it until smooth and elastic, about 2-3 minutes on a floured surface. This will help develop the gluten structure, which contributes to the chewy texture we associate with traditional bagels.

Perfecting the Boiling Process

Boiling the bagels is a crucial step that transforms their texture, making them chewy on the outside while still soft inside. As you boil each bagel, keep the water rolling at a gentle boil, and don't overcrowd the pot, as this can cause the water temperature to drop. Ideally, boil each bagel for about 1 minute per side, watching for a slight puffiness as they cook. This step also helps develop a crust that is golden and crisp once baked.

If you want to experiment, you could add baking soda or malt syrup to the boiling water. This will give your bagels a deeper shine and a richer flavor once they’re baked. However, remember that too much can overpower the inherent flavor of the bagels, so start with a tablespoon if you're trying this for the first time.

Storing and Serving Your Bagels

These protein bagels freeze exceptionally well, making them perfect for meal preparation. After baking, allow the bagels to cool completely, then wrap them individually in plastic wrap and store them in a freezer bag. They can be frozen for up to three months. When you're ready to enjoy one, simply remove it from the freezer and toast it directly, or let it thaw overnight in the refrigerator for a softer option.

For serving, consider different toppings that can enhance the bagels' flavor. Cream cheese is a classic choice, but you can also try flavored spreads like herbed cream cheese or hummus for something different. Avocado is another fantastic option, either smashed or sliced, providing healthy fats and a creamy texture that pairs well with the chewy bagels. Don't hesitate to get creative with your toppings—think smoked salmon, tomatoes, or even nut butters!

Ingredients

Ingredients

For the Bagels

  • 2 cups whole wheat flour
  • 1 cup plain Greek yogurt
  • 1/4 cup protein powder
  • 1 tablespoon baking powder
  • 1 teaspoon salt
  • 1 tablespoon honey or maple syrup
  • Water (for boiling)

Optional Toppings

Sesame seeds, poppy seeds, or everything bagel seasoning

Instructions

Instructions

Preheat the Oven

Preheat your oven to 375°F (190°C) and line a baking sheet with parchment paper.

Mix the Dough

In a large bowl, combine whole wheat flour, protein powder, baking powder, and salt. Add Greek yogurt and honey, mixing until a dough forms.

Knead and Shape

Transfer the dough to a floured surface and knead for 2-3 minutes until smooth. Divide the dough into 8 equal pieces and shape each piece into a bagel.

Boil the Bagels

Bring a large pot of water to a boil. Boil each bagel for 1 minute on each side. This step is crucial for achieving the chewy texture.

Bake the Bagels

Place the boiled bagels on the prepared baking sheet. If desired, sprinkle with toppings. Bake for 20-25 minutes or until golden brown.

Cool and Enjoy

Allow the bagels to cool for a few minutes before slicing and enjoying with your favorite toppings.

Pro Tips

  • Experiment with different toppings for variety! You can also try adding spices or herbs to the dough for extra flavor.

Ingredient Substitutions

If you're looking for a lower-carb option, consider substituting the whole wheat flour with almond flour or coconut flour for a gluten-free twist. However, note that these flours behave differently; almond flour will provide a richer flavor, while coconut flour requires extra moisture. Adjust the liquid amounts accordingly and be mindful that the texture may differ slightly from the original recipe.

For the protein powder, you can choose whey, pea, or soy protein depending on your dietary needs. Keep in mind that the flavor and texture might change based on the type of protein powder used, so selecting a neutral flavor will result in the best results.

Scaling the Recipe

If you want to make a larger batch of bagels, this recipe can easily be doubled or tripled. Simply maintain the same proportions of dough ingredients, and ensure that you have a large enough workspace for kneading and shaping the dough. Be mindful that larger batches may require an additional baking sheet and longer boiling time, but the same principles apply. Keep a close eye on them in the oven to achieve that perfect golden brown hue.

When scaling down, it’s just as simple; halve the ingredients and adjust according to your preferences. While you might be tempted to mix and match flavors, starting with the basic dough recipe allows you to perfect the bagel texture before experimenting with variations.

Questions About Recipes

→ Can I use all-purpose flour instead of whole wheat?

Yes, all-purpose flour can be used, but the bagels will be less hearty.

→ How should I store these bagels?

Store them in an airtight container at room temperature for 2-3 days or freeze them for longer storage.

→ Can I make these bagels vegan?

To make them vegan, replace Greek yogurt with a plant-based yogurt and use maple syrup instead of honey.

→ Can I add toppings before boiling?

For best results, add toppings after boiling and before baking for optimal adhesion.

Protein Bagels With Whole Wheat Flour

I absolutely love baking, and these Protein Bagels With Whole Wheat Flour have become one of my favorite go-to recipes. They are incredibly easy to make and pack a punch in protein, giving me a great boost to start my day. Each bite is chewy, satisfying, and perfect for toasting. I often enjoy them with a smear of cream cheese or avocado for added flavor. Plus, they store well in the freezer, making it convenient to have fresh bagels whenever I want. Trust me, once you try these bagels, you won’t want store-bought again!

Prep Time15 minutes
Cooking Duration25 minutes
Overall Time40 minutes

Created by: Isolde Bennett

Recipe Type: Easy Healthy Meals Ideas

Skill Level: Beginner

Final Quantity: 8 bagels

What You'll Need

For the Bagels

  1. 2 cups whole wheat flour
  2. 1 cup plain Greek yogurt
  3. 1/4 cup protein powder
  4. 1 tablespoon baking powder
  5. 1 teaspoon salt
  6. 1 tablespoon honey or maple syrup
  7. Water (for boiling)

How-To Steps

Step 01

Preheat your oven to 375°F (190°C) and line a baking sheet with parchment paper.

Step 02

In a large bowl, combine whole wheat flour, protein powder, baking powder, and salt. Add Greek yogurt and honey, mixing until a dough forms.

Step 03

Transfer the dough to a floured surface and knead for 2-3 minutes until smooth. Divide the dough into 8 equal pieces and shape each piece into a bagel.

Step 04

Bring a large pot of water to a boil. Boil each bagel for 1 minute on each side. This step is crucial for achieving the chewy texture.

Step 05

Place the boiled bagels on the prepared baking sheet. If desired, sprinkle with toppings. Bake for 20-25 minutes or until golden brown.

Step 06

Allow the bagels to cool for a few minutes before slicing and enjoying with your favorite toppings.

Extra Tips

  1. Experiment with different toppings for variety! You can also try adding spices or herbs to the dough for extra flavor.

Nutritional Breakdown (Per Serving)

  • Calories: 210 kcal
  • Total Fat: 2g
  • Saturated Fat: 0g
  • Cholesterol: 5mg
  • Sodium: 190mg
  • Total Carbohydrates: 40g
  • Dietary Fiber: 6g
  • Sugars: 1g
  • Protein: 15g